Publications - Balance of the Microverse

Vareschi S, Jaut V, Vijay S, Allen RJ, Schreiber F 2025 Antimicrobial efflux and biofilms: an interplay leading to emergent resistance evolution. Trends Microbiol ,

Zhao T, Jia X, Nepal J, Attard E, Guyoneaud R, Elzenga JTM, Falcão Salles J 2025 A microbiome perspective of Grime's triangle and plant ecological trade-offs. Trends Plant Sci ,

Valentine M, Rosati D, Dietschmann A, Schille TB, Netea MG, Hube B, Gresnigt MS 2025 Probiotic Lactobacillus species modulate immune responses during vaginal epithelial cell colonization. J Infect Dis ,

Perçin G, Riege K, Fröbel J, Metz J, Culemann S, Lesche M, Reinhardt S, Höfer T, Hoffmann S, Waskow C 2025 Embryonic macrophages orchestrate niche cell homeostasis for the establishment of the definitive hematopoietic stem cell pool. Nat Commun 16, 4428.

Valentine M, Wilson D, Gresnigt MS, Hube B 2025 Vaginal Candida albicans infections: host-pathogen-microbiome interactions. FEMS Microbiol Rev 49,

Romashkina A, Sushil S, Barreda AI, Fedorova Z, Abtahi F, Doolaard N, Zhang Z, Helgert C, Staude I, Eilenberger F, Pertsch T, Tugchin BN 2025 Enhanced Exciton–Plasmon Interaction Enabling Observation of Near-Field Photoluminescence in a WSe2–Gold Nanoparticle Hybrid System ACS Photonics ,

Zschoche N, Schober S, Walther K, Chadeayne AR, Gressler M, Bartram S, O'Connor SE, Hoffmeister D 2025 Clade III Synthases Add Cyclic And Linear Terpenoids To The Psilocybe Metabolome. Chembiochem , e202500167.

Wegner VD, Feile A, Alb M, Hudecek M, Hewitt P, Mosig AS 2025 Short-Chain Fatty Acids Modulate Anti-ROR1 CAR T-Cell Function and Exhaustion in an Intestinal Adenocarcinoma-on-Chip Model. Adv Healthc Mater 14, e2405003.

Lortal L, Lyon CM, Sprague JL, Sonnberger J, Paulin OKA, Wickramasinghe DN, Richardson JP, Hube B, Naglik JR 2025 Candidalysin biology and activation of host cells. mBio , e0060324.

Bull F, Tavaddod S, Bommer N, Perry M, Brackley CA, Allen RJ 2025 Different factors control long-term versus short-term outcomes for bacterial colonisation of a urinary catheter. Nat Commun 16, 3940.

Wöhnert J, Neissner K, Duchardt-Ferner E, Wiedemann C, Kraus J, Hellmich UA 2025 Protonated Glutamate and Aspartate Side Chains Can Recognize Phosphodiester Groups via Strong and Short Hydrogen Bonds in Biomacromolecular Complexes. Angew Chem Int Ed Engl , e202501589.

Westfall S, Gentile ME, Olsen TM, Karo-Atar D, Bogza A, Röstel F, Pardy RD, Mandato G, Fontes G, Herbert D, Melichar HJ, Abadie V, Richer MJ, Vinh DC, Koenig JFE, Harrison OJ, Divangahi M, Weis S, Gregorieff A, King IL 2025 A type 1 immune-stromal cell network mediates disease tolerance against intestinal infection. Cell ,

Benea-Chelmus I, Moskalenko AS, Faist J, Pupeza I, Leitenstorfer A, Seletskiy DV, Vodopyanov KL 2025 Electro-optic sampling of classical and quantum light Optica 12, 546-563.

Kepesidis KV, Jacob P, Schweinberger W, Huber M, Feiler N, Fleischmann F, Trubetskov M, Voronina L, Aschauer J, Eissa T, Gigou L, Karandušovsky P, Pupeza I, Weigel A, Azzeer A, Stief CG, Chaloupka M, Reinmuth N, Behr J, Kolben T, Harbeck N, Reiser M, Krausz F, Žigman M 2025 Electric-Field Molecular Fingerprinting to Probe Cancer. ACS Cent Sci 11, 560-573.

Zhang S, Huang Y, Nachawati R, Huber P, Walther G, Gregor L, Vilotijević I, Stallforth P 2025 Pangenome Analysis of the Plant Pathogen Pseudomonas syringae Reveals Unique Natural Products for Niche Adaptation. Angew Chem Int Ed Engl , e202503679.

Bürkle M, Korf IHE, Lippegaus A, Krautwurst S, Rohde C, Weissfuss C, Nouailles G, Tene XM, Gaborieau B, Ghigo JM, Ricard JD, Hocke AC, Papenfort K, Debarbieux L, Witzenrath M, Wienhold SM, Krishnamoorthy G 2025 Phage-phage competition and biofilms affect interactions between two virulent bacteriophages and Pseudomonas aeruginosa. ISME J ,

Herzog E, Ishida K, Scherlach K, Chen X, Bartels B, Niehs SP, Cheaib B, Panagiotou G, Hertweck C 2025 Antibacterial Siderophores of Pandoraea Pathogens and Their Impact on the Diseased Lung Microbiota. Angew Chem Int Ed Engl , e202505714.

Bogdanova O, Krause K, Pietschmann S, Kothe E 2025 Drivers of fungal and bacterial communities in ectomycorrhizospheres of birch, oak, and pine in a former uranium mining site, Ronneburg, Germany. Environ Sci Pollut Res Int ,

Zhang S, Schlabach K, Pérez Carrillo VH, Ibrahim A, Nayem S, Komor A, Mukherji R, Chowdhury S, Reimer L, Trottmann F, Vlot AC, Hertweck C, Hellmich UA, Stallforth P 2025 A chemical radar allows bacteria to detect and kill predators. Cell ,

Haufschild T, Hammer J, Rabold N, Plut V, Jogler C, Kallscheuer N 2025 Novel tools for genomic modification and heterologous gene expression in the phylum Planctomycetota. Appl Microbiol Biotechnol 109, 79.

Nikitashina L, Chen X, Radosa L, Li K, Straßburger M, Seelbinder B, Böhnke W, Vielreicher S, Nietzsche S, Heinekamp T, Jacobsen ID, Panagiotou G, Brakhage AA 2025 The murine lung microbiome is disbalanced by the human-pathogenic fungus Aspergillus fumigatus resulting in enrichment of anaerobic bacteria. Cell Rep 44, 115442.

López Romo G, Santamaría RI, Bustos P, Echavarría F, Reveles Torres LR, Van Cauwenberghe J, González V 2025 The rhizosphere of Phaseolus vulgaris L. cultivars hosts a similar bacterial community in local agricultural soils. PLoS One 20, e0319172.

Demina T, Marttila H, Pessi IS, Männistö MK, Dutilh BE, Roux S, Hultman J 2025 Tunturi virus isolates and metagenome-assembled viral genomes provide insights into the virome of Acidobacteriota in Arctic tundra soils. Microbiome 13, 79.

Sawada M, Nakajima C, Umeda E, Takagi Y, Nakashima N, Vepřek NA, Küllmer F, Nasufović V, Arndt HD, Trauner D, Igarashi M, Sawamoto K 2025 Time-Lapse Super-Resolution Imaging and Optical Manipulation of Growth Cones in Elongating Axons and Migrating Neurons. Bio Protoc 15, e5251.

Koceva H, Amiratashani M, Akbarimoghaddam P, Hoffmann B, Zhurgenbayeva G, Gresnigt MS, Marcelino VR, Eggeling C, Figge MT, Amorim MJ, Mosig AS 2025 Deciphering respiratory viral infections by harnessing organ-on-chip technology to explore the gut-lung axis. Open Biol 15, 240231.

Praetorius JP, Hitzler SUJ, Gresnigt MS, Figge MT 2025 Image-based quantification of Candida albicans filamentation and hyphal length using the open-source visual programming language JIPipe. FEMS Yeast Res ,

Bando Y, Klapper M, Herbst R, Sachse A, Stallforth P, Arndt HD 2025 Semiautomated Total Synthesis of the Cyclic Lipodepsipeptide Anikasin. Org Lett ,

Tröger J, Dahlhaus R, Bayrhammer A, Koch D, Kessels MM, Qualmann B 2025 Mitochondria are positioned at dendritic branch induction sites, a process requiring rhotekin2 and syndapin I. Nat Commun 16, 2353.

Nikitashina V, Bartels B, Mansour JS, LeKieffre C, Decelle J, Hertweck C, Not F, Pohnert G 2025 Metabolic interdependence and rewiring in Radiolaria-microalgae Photosymbioses. ISME J ,

Wasmuth I, Warinner C, Stallforth P 2025 Microbial dynamics and Pseudomonas natural product production in milk and dairy products. Nat Prod Rep ,

Lenić A, Bardl B, Kloss F, Peschel G, Schlembach I, Lackner G, Regestein L, Rosenbaum MA 2025 Pilot Scale Production of a F420 Precursor Under Microaerobic Conditions. Biotechnol J 20, e70002.

Schultz C, Rodewald M, Weidisch A, Meyer-Zedler T, Caffard T, Schmitt M, Matziolis G, Zippelius T, Popp J 2025 4D-Spatiotemporal SHG Imaging for the Analysis of Drug-Induced Changes in the Dura Mater Anal Chem 97, 3892-3900.

Pérez Carrillo VH, Whittaker JJ, Wiedemann C, Harder JM, Lohr T, Jamithireddy AK, Dajka M, Goretzki B, Joseph B, Guskov A, Harmer NJ, Holzgrabe U, Hellmich UA 2025 Structure and Dynamics of Macrophage Infectivity Potentiator Proteins from Pathogenic Bacteria and Protozoans Bound to Fluorinated Pipecolic Acid Inhibitors. J Med Chem ,

Xu LL, McIlroy SE, Ni Y, Guibert I, Chen J, Rocha U, Baker DM, Panagiotou G 2025 Chemical pollution drives taxonomic and functional shifts in marine sediment microbiome, influencing benthic metazoans. ISME Commun 5, ycae141.

Verdon N, Popescu O, Titmuss S, Allen RJ 2025 Habitat fragmentation enhances microbial collective defence. J R Soc Interface 22, 20240611.

Dickmann P, Claus RA, Bauer M 2025 Sepsis after Trauma—Evolving Paradigms in Stress Biology and Host Response Failure Burns & Trauma

Graf M, Sarkar A, Svensson CM, Munser AS, Schröder S, Hengoju S, Rosenbaum MA, Figge MT 2025 Rapid detection of microbial antibiotic susceptibility via deep learning supported analysis of angle-resolved scattered-light images of picoliter droplet cultivations Sensors and Actuators B: Chemical 424, 136866.

Koceva H, Mosig A 2025 Human-Induced Pluripotent Stem Cell-Based Alveolus-on-Chip Model to Study Influenza Virus A Infection. Methods Mol Biol 2890, 225-235.

Wright SS, Kumari P, Fraile-Ágreda V, Wang C, Shivcharan S, Kappelhoff S, Margheritis EG, Matz A, Vasudevan SO, Rubio I, Bauer M, Zhou B, Vanaja SK, Cosentino K, Ruan J, Rathinam VA 2025 Transplantation of gasdermin pores by extracellular vesicles propagates pyroptosis to bystander cells. Cell ,

Velsko IM, Warinner C 2025 Streptococcus abundance and oral site tropism in humans and non-human primates reflects host and lifestyle differences. NPJ Biofilms Microbiomes 11, 19.

Krstić A, Gäbler TB, Jain N, Then P, Gili VF, Saravi S, Setzpfand F, Eggeling C, Gräfe M 2025 Enhancing entangled two-photon absorption of Nile Red via temperature-controlled SPDC APL Quantum 1,

Schroeter SA, Orme AM, Lehmann K, Lehmann R, Chaudhari NM, Küsel K, Wang H, Hildebrandt A, Totsche KU, Trumbore S, Gleixner G 2025 Hydroclimatic extremes threaten groundwater quality and stability. Nat Commun 16, 720.

Brassington PJT, Klefisch FR, Graf B, Pfüller R, Kurzai O, Walther G, Barber AE 2025 Genomic reconstruction of an azole-resistant Candida parapsilosis outbreak and the creation of a multi-locus sequence typing scheme: a retrospective observational and genomic epidemiology study. Lancet Microbe 6, 100949.

Nychas E, Marfil-Sánchez A, Chen X, Mirhakkak M, Li H, Jia W, Xu A, Nielsen HB, Nieuwdorp M, Loomba R, Ni Y, Panagiotou G 2025 Discovery of robust and highly specific microbiome signatures of non-alcoholic fatty liver disease. Microbiome 13, 10.

Hofer C, Bausch D, Fürst L, Wei Z, Högner M, Butler TP, Gebhardt M, Heuermann T, Gaida C, Maiti KS, Huber M, Fill E, Limpert J, Krausz F, Karpowicz N, Pupeza I 2025 Linear field-resolved spectroscopy approaching ultimate detection sensitivity Optics Express 33, 1-17.

Maneira C, Chamas A, Lackner G 2025 Engineering Saccharomyces cerevisiae for medical applications. Microb Cell Fact 24, 12.

Velasco-Gomariz M, Sulzer J, Faber F, Fröhlich KS 2025 An sRNA overexpression library reveals AbnZ as a negative regulator of an essential translocation module in Caulobacter crescentus Nucleic Acids Research gkae1139,

Li K, Cho YI, Tran MA, Wiedemann C, Zhang S, Koweek RS, Hoàng NK, Hamrick GS, Bowen MA, Kokona B, Stallforth P, Beld J, Hellmich UA, Charkoudian LK 2025 Strategic Acyl Carrier Protein Engineering Enables Functional Type II Polyketide Synthase Reconstitution In Vitro. ACS Chem Biol ,

Zhou Z, Kleis L, Depetris-Chauvin A, Jaskulski S, Damerell V, Michels KB, Gigic B, Nöthlings U, Panagiotou G 2025 Beneficial microbiome and diet interplay in early-onset colorectal cancer. EMBO Mol Med ,

Nair A, Doijad SP, Suryavanshi MV, Dey A, Singh Malik SV, Dutilh BE, Barbuddhe SB 2025 Unveiling the Kadaknath Gut Microbiome: Early Growth Phase Spatiotemporal Diversity Microbiology Research 16, 54.